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slide seq  (Broad Clinical Labs)


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    Broad Clinical Labs slide seq
    Slide Seq, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 870 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/slide+seq/Single+Cell+Sequencing/bio_rxiv__64898__2026__02__26__708361-187-49-50
    Average 96 stars, based on 870 article reviews
    slide seq - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Biomarker Discovery:

    Article Title: ChatSpatial: Schema-Enforced Agentic Orchestration for Reproducible and Cross-Platform Spatial Transcriptomics
    Article Snippet: .. All public datasets used for benchmarking and validation in this study are listed below and documented in a dedicated reproducibility repository ( https://github.com/cafferychen777/ChatSpatial-Reproducibility ): Additional datasets used for platform validation ( ) include SPOTS (GSE198353), Visium multi-sample benchmarks (GSE254652, GSE243275), MER-FISH (GSE113576), seqFISH (GSE133244), STARmap ( https://www.wangxiaolab . org/data-portal-1), Slide-seq (Broad Institute Single Cell Portal SCP354), and Xenium (10x Genomics public dataset). ..

    Single Cell:

    Article Title: ChatSpatial: Schema-Enforced Agentic Orchestration for Reproducible and Cross-Platform Spatial Transcriptomics
    Article Snippet: .. All public datasets used for benchmarking and validation in this study are listed below and documented in a dedicated reproducibility repository ( https://github.com/cafferychen777/ChatSpatial-Reproducibility ): Additional datasets used for platform validation ( ) include SPOTS (GSE198353), Visium multi-sample benchmarks (GSE254652, GSE243275), MER-FISH (GSE113576), seqFISH (GSE133244), STARmap ( https://www.wangxiaolab . org/data-portal-1), Slide-seq (Broad Institute Single Cell Portal SCP354), and Xenium (10x Genomics public dataset). ..



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    AIR-SPACE enables the mapping of adaptive immune receptor (AIR) clonotypes and <t>transcriptomics</t> in situ. ( A ) Schematic of the experimental design and methodology, including the generation of long-read (LR) and short-read (SR). ( B ) Spatial mapping of cell types across the LN sections at different time points postinfection. (Scale bar, 500 μm.) ( C ) Spatial mapping of AIR clonotypes across the LN sections, with immunoglobulin (IG) clones shown in blue and T cell receptor (TCR) clones shown in red; outlined with germinal center (GC) regions in LNs from D10PI to D21PI. ( D ) Multiplexed RNA FISH staining for T cell marker Trbc2 (green), B cell marker Ms4a1 (red), and DAPI (blue) across all samples on sister sections. (Scale bar 500 μm.)
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    Image Search Results


    AIR-SPACE enables the mapping of adaptive immune receptor (AIR) clonotypes and transcriptomics in situ. ( A ) Schematic of the experimental design and methodology, including the generation of long-read (LR) and short-read (SR). ( B ) Spatial mapping of cell types across the LN sections at different time points postinfection. (Scale bar, 500 μm.) ( C ) Spatial mapping of AIR clonotypes across the LN sections, with immunoglobulin (IG) clones shown in blue and T cell receptor (TCR) clones shown in red; outlined with germinal center (GC) regions in LNs from D10PI to D21PI. ( D ) Multiplexed RNA FISH staining for T cell marker Trbc2 (green), B cell marker Ms4a1 (red), and DAPI (blue) across all samples on sister sections. (Scale bar 500 μm.)

    Journal: Proceedings of the National Academy of Sciences of the United States of America

    Article Title: A temporal and spatial atlas of adaptive immune responses in the lymph node following viral infection

    doi: 10.1073/pnas.2504742123

    Figure Lengend Snippet: AIR-SPACE enables the mapping of adaptive immune receptor (AIR) clonotypes and transcriptomics in situ. ( A ) Schematic of the experimental design and methodology, including the generation of long-read (LR) and short-read (SR). ( B ) Spatial mapping of cell types across the LN sections at different time points postinfection. (Scale bar, 500 μm.) ( C ) Spatial mapping of AIR clonotypes across the LN sections, with immunoglobulin (IG) clones shown in blue and T cell receptor (TCR) clones shown in red; outlined with germinal center (GC) regions in LNs from D10PI to D21PI. ( D ) Multiplexed RNA FISH staining for T cell marker Trbc2 (green), B cell marker Ms4a1 (red), and DAPI (blue) across all samples on sister sections. (Scale bar 500 μm.)

    Article Snippet: Slide-seq spatial transcriptomics experiment was performed using the Curio Seeker Kit (Curio Bioscience) according to manufacturer instructions.

    Techniques: In Situ, Clone Assay, Staining, Marker